Tracks
DrosOmics contains TE and gene annotations for currently 52 D. melanogaster genomes. Note that the current version of DrosOmics provides gene annotations that were transferred to each genome from the reference release 6 of D. melanogaster (Larkin et al., 2021). Functional -omics data for 26 genomes were retrieved from previous research (see Data description) or are reported in Coronado-Zamora et al. (2023) for the first time.
◆This publication (Coronado-Zamora et al., 2023); ■Everett et al. (2020); ▲Salces-Ortiz et al. (2020); ●Green et al. (2021); ►Horváth et al. (2022). The number of replicates (repl) for each dataset is given.| Track type | Track name | Description | Genomes | Datasets |
|---|---|---|---|---|
| Genome sequence | Reference sequence | Displayed by chromosome arm (2R, 2L, 3L, 3R and X) | All | 52 |
| Genome annotations | TE annotations Gene annotations |
-De novo TE annotations-Gene annotations transferred from D. melanogaster release 6 annotation | All | 104 |
| RNA-seq | RNA-seq coverage | RNA-seq coverage profiles:Basal conditions: head, gut, ovaryBasal conditions: whole-bodyBasal and malathion treatment: gutsBasal and copper treatment: whole body femalesBasal and desiccation treatment: whole body females | ◆ 5 genomes ■8 genomes ▲ 4 genomes ● 6 genomes ► 6 genomes |
15 (3 repl) 8 (2 repl) 8 (3 repl) 12 (3 repl) 12 (3 repl) |
| ChIP-Seq | Histone marks fold enrichment signal Histone marks peak callingH3K9me3 (repressive mark): head, gut, ovaryH3K27ac (active mark): head, gut, ovary |
◆ 5 genomes ◆ 5 genomes |
15 (3 repl) 15 (3 repl) |
|
| ATAC-seq | ATAC-seq fold enrichment signal ATAC-seq peak calling |
▲4 genomes |
8 (3 repl) |